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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33247540_33250233_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33247540 - 33250233
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTTTTGCA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
AATAGTCAATTT
Flanking Amino Acid:
STNKDTWRFFWWTELCPMIE
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.2
54.4
36.3
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
87
0.83
0.7
81.2
36.5
Minor 5ss
35.6
-1.6
2.9
39.6
40.8
Minor BPS
34
-1.1
2.1
48.42
38.8

Associated Gene:

Gene:
KLHL7
Ensembl Gene ID:
ENSAPLG00000012105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012635
33230504 - 33252265
21762