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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33254469_33254599_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33254469 - 33254599
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
CTTGTGTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAG
U12 Branch Point Sequence:
GGGTTTGGAGCT
Flanking Amino Acid:
HPRGGGGRQQGAARGGGGGG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
49
-0
1.8
57.1
49.4
Major PPT
69.6
0.44
1.1
65.3
41.1
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
39.6
-0.7
2.1
53.56
41.9

Associated Gene:

Gene:
NUP42
Ensembl Gene ID:
ENSAPLG00000012786
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013309
33253647 - 33259908
6262