About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33254832_33255681_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33254832 - 33255681
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
CTTTGTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTCCTTCATT
Flanking Amino Acid:
DGYRDEDEKLLECIVKDMEI
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81
0.7
0.8
73.6
37
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
72.9
0.8
1.7
87.41
38.9

Associated Gene:

Gene:
NUP42
Ensembl Gene ID:
ENSAPLG00000012786
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013309
33253647 - 33259908
6262