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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33255777_33256075_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33255777 - 33256075
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCTTTGAGA
Flanking Amino Acid:
SPMKDKPNITGFQDFSPEEL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.7
0.67
0.8
73
31.8
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
71.8
0.68
1.6
81.99
33.2

Associated Gene:

Gene:
NUP42
Ensembl Gene ID:
ENSAPLG00000012786
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013309
33253647 - 33259908
6262