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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33256153_33257382_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33256153 - 33257382
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AGTCTAATAAAA
Flanking Amino Acid:
CRANSSAQTYLNSVQQLVKG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
77.5
0.62
0.8
76.1
32.5
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
44.3
-0.4
1.8
55.91
35.5

Associated Gene:

Gene:
NUP42
Ensembl Gene ID:
ENSAPLG00000012786
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013309
33253647 - 33259908
6262