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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33259226_33259336_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33259226 - 33259336
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCATTTGTAATT
Flanking Amino Acid:
GQQTSSFGASSFPVNSSSTS
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.1
0.7
0.9
74.9
38.8
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
48.8
-0
2
64.21
41.1

Associated Gene:

Gene:
NUP42
Ensembl Gene ID:
ENSAPLG00000012786
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013309
33253647 - 33259908
6262