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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33286382_33287084_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33286382 - 33287084
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTGTTTTTTACA
Flanking Amino Acid:
DDPRWKDCWKGGRVTAKLVT
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
64.3
0.44
1.6
74.12
37.8

Associated Gene:

Gene:
GPNMB
Ensembl Gene ID:
ENSAPLG00000013155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013705
33281012 - 33297714
16703