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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33291924_33292638_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33291924 - 33292638
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTGTCCTACAGT
Flanking Amino Acid:
GYYTTGLSIVEGILEVNIIQ
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.8
0.74
0.8
73.9
36.7
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
46.7
-0.1
2.3
68.02
48.5

Associated Gene:

Gene:
GPNMB
Ensembl Gene ID:
ENSAPLG00000013155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013705
33281012 - 33297714
16703