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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33292742_33293624_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33292742 - 33293624
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCACCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
GTCTTCCCACCC
Flanking Amino Acid:
LVDFVVTCQGSLPTDVCTAV
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
71.8
0.49
0.8
62.7
33
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
43.6
-0.5
2
55.52
42.7

Associated Gene:

Gene:
GPNMB
Ensembl Gene ID:
ENSAPLG00000013155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013705
33281012 - 33297714
16703