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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33293831_33296287_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33293831 - 33296287
Intron Length:
2457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TATTTCTGAACT
Flanking Amino Acid:
LASALISVNRGSSPGTTKGV
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69.3
0.43
0.9
60.2
40.6
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
77.3
0.94
1.3
90.1
33.2

Associated Gene:

Gene:
GPNMB
Ensembl Gene ID:
ENSAPLG00000013155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013705
33281012 - 33297714
16703