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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33296376_33297178_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33296376 - 33297178
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
CTTCCAGCAACT
Flanking Amino Acid:
FASVGAFVLYKRYKQYKPIE
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.2
26.2
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
42.2
-0.9
2.8
52.8
38.5
Minor BPS
45.4
-0.2
2.4
71.07
45.3

Associated Gene:

Gene:
GPNMB
Ensembl Gene ID:
ENSAPLG00000013155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013705
33281012 - 33297714
16703