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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33300854_33300922_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33300854 - 33300922
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
GGGGTGGGGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCGCCAT
U12 Branch Point Sequence:
CCCCTCGGCAGG
Flanking Amino Acid:
VEQRRAAGRARPWARCSARG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
45
-0.3
1.4
49.7
44
Major PPT
46.6
-0.2
1.2
34.4
45.4
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
28.5
-1.8
2.1
23.74
36.5

Associated Gene:

Gene:
MALSU1
Ensembl Gene ID:
ENSAPLG00000013280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013820
33300639 - 33303795
3157