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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33301027_33301722_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33301027 - 33301722
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGGTCA
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CACTCTCTAATT
Flanking Amino Acid:
QAAGRAAQGGDTAKFNIDFV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
56.3
39.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
84.1
0.77
0.8
76.4
37.7
Minor 5ss
29.7
-2.3
3.4
29.4
43.4
Minor BPS
56.1
0.27
1.7
69.2
42.4

Associated Gene:

Gene:
MALSU1
Ensembl Gene ID:
ENSAPLG00000013280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013820
33300639 - 33303795
3157