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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33301896_33302919_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33301896 - 33302919
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
AAGTATTCCACT
Flanking Amino Acid:
HAMANYMMKMYKLQKEDSDP
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
64.3
41.6
Major BPS
66.7
0.41
1
57.8
39
Major PPT
77.6
0.62
0.8
69
37
Minor 5ss
31.4
-2.1
3.1
36.3
41.6
Minor BPS
44
-0.3
2
60.72
42.8

Associated Gene:

Gene:
MALSU1
Ensembl Gene ID:
ENSAPLG00000013280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013820
33300639 - 33303795
3157