About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33312193_33315495_R


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
33312193 - 33315495

Intron Length:
3303

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGCCAC

5'SS Class:
strong_major

3'SS Sequence:
AACACTTTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTTTAA

U12 Branch Point Sequence:
CATTCTTTAACT

Flanking Amino Acid:
ITGPPEAQFKAQGRIYGKLK

Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
87.9
0.89
0.9
72.3
39.5

Major BPS
74.7
0.61
1
65.9
40.9

Major PPT
72.9
0.51
0.9
65.6
39.9

Minor 5ss
38.2
-1.3
3.1
50.1
46.5

Minor BPS
82.6
1.1
1.1
88.93
35.9

Associated Gene:

Gene:
IGF2BP3

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

33309663 - 33393775
84113

33309663 - 33416817
107155