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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33315571_33319623_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33315571 - 33319623
Intron Length:
4053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTA
5'SS Class:
major
3'SS Sequence:
TTATCCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTATGTTTATCC
Flanking Amino Acid:
LSRFAGASIKIAPAEGPDAK
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72.3
33
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.7
0.67
0.9
70.9
39.5
Minor 5ss
47.7
-0.2
2.8
65.1
46
Minor BPS
49.4
-0
2
62.43
43.5

Associated Gene:

Gene:
IGF2BP3
Ensembl Gene ID:
ENSAPLG00000013290
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019595
33309663 - 33393775
84113
ENSAPLT00000013864
33309663 - 33416817
107155