About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33335052_33336800_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
33335052 - 33336800

Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAC|GTGAGTTGT

5'SS Class:
major

3'SS Sequence:
TCTGCCATTGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATCTAAA

U12 Branch Point Sequence:
TAAATCTAAAAT

Flanking Amino Acid:
SYENDIAAMNLQAHLIPGLN

Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.4
0.6
1.3
74.8
38.1

Major BPS
76.5
0.66
0.8
75.9
24.9

Major PPT
77
0.61
0.9
70.1
35

Minor 5ss
37.9
-1.4
3
48.4
41.2

Minor BPS
49.9
0.08
1.8
67.98
42.2

Associated Gene:

Gene:
IGF2BP3

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

33309663 - 33393775
84113

33309663 - 33416817
107155