About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33336937_33338484_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33336937 - 33338484
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTCCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTAATTAATT
Flanking Amino Acid:
QDTDTKITISPLQDLTLYNP
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.3
79.1
37.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.4
0.66
0.8
74.3
30.9
Minor 5ss
48
-0.2
2.8
71.9
38.1
Minor BPS
58
0.33
1.8
75.07
41.5

Associated Gene:

Gene:
IGF2BP3
Ensembl Gene ID:
ENSAPLG00000013290
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013864
33309663 - 33416817
107155
ENSAPLT00000019595
33309663 - 33393775
84113