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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33392944_33393563_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33392944 - 33393563
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGGGATT
5'SS Class:
major
3'SS Sequence:
GATTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
HAARLCSSTSKSRKLQIRNI
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1
72.3
38.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.6
0.69
0.9
74
40.3
Minor 5ss
33.1
-1.9
3.6
47.8
42.6
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
IGF2BP3
Ensembl Gene ID:
ENSAPLG00000013290
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019595
33309663 - 33393775
84113