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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33438458_33438851_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33438458 - 33438851
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTTTCCCTAATA
Flanking Amino Acid:
QVTPIVSSHKAVEEVVVAEQ
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
77.9
0.63
0.8
74.6
29.1
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
77.7
0.86
1.6
88.3
28.6

Associated Gene:

Gene:
TRA2A
Ensembl Gene ID:
ENSAPLG00000013689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024220
33437350 - 33461328
23979