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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33450516_33452178_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33450516 - 33452178
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TATGACCTAACT
Flanking Amino Acid:
ESHSRSRSKSRSRSRRHSHR
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
72.8
0.51
1.1
74.2
34.3
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
56.8
0.29
2
79.31
42.1

Associated Gene:

Gene:
TRA2A
Ensembl Gene ID:
ENSAPLG00000013689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024220
33437350 - 33461328
23979
ENSAPLT00000014288
33437350 - 33461328
23979