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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33476583_33477516_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33476583 - 33477516
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCGCTATCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAGACCAAAATT
Flanking Amino Acid:
GGSGASMAGYADLKRTIAVL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
80
0.75
1
78.6
31
Major PPT
77
0.61
0.9
73.7
35.8
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
48
-0
2
66.88
43.8

Associated Gene:

Gene:
CCDC126
Ensembl Gene ID:
ENSAPLG00000013834
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014409
33475398 - 33477698
2301