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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33485878_33487059_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33485878 - 33487059
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGGC
5'SS Class:
major
3'SS Sequence:
AACATGCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTAACA
Flanking Amino Acid:
AALDEYAEYRRIVGDDDGGK
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
58.1
41
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.9
0.38
1
57.7
42.3
Minor 5ss
29.8
-2.3
3.5
40.6
46
Minor BPS
79.3
0.92
1.1
82.25
33.1

Associated Gene:

Gene:
FAM221A
Ensembl Gene ID:
ENSAPLG00000013898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014479
33485822 - 33493490
7669