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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33487234_33487702_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33487234 - 33487702
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GGTTATACAAGT
Flanking Amino Acid:
GPETLCFCTHRYKQHKTDYE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.5
38.6
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
75.2
0.57
0.9
73.3
37.1
Minor 5ss
48.9
-0.1
2.8
68.8
42.1
Minor BPS
41.5
-0.5
2.1
59.98
42.9

Associated Gene:

Gene:
FAM221A
Ensembl Gene ID:
ENSAPLG00000013898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014479
33485822 - 33493490
7669