About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33487894_33490115_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33487894 - 33490115
Intron Length:
2222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
ATTTGTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATTTGTTAATT
Flanking Amino Acid:
SAAPGFSCNSCSKCSGFHSC
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.1
31.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
68.1
0.41
1
68.2
41.9
Minor 5ss
43.1
-0.8
2.8
58.5
40.5
Minor BPS
65.9
0.58
2
84.43
36.6

Associated Gene:

Gene:
FAM221A
Ensembl Gene ID:
ENSAPLG00000013898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014479
33485822 - 33493490
7669