About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33491185_33491875_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33491185 - 33491875
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATAAAT
5'SS Class:
major
3'SS Sequence:
TTTTCCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GTTTTTTCCACT
Flanking Amino Acid:
SSAQTISQIAGCSTATMQVS
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
78.7
29.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.3
0.79
0.7
82.8
27.3
Minor 5ss
29.8
-2.3
2.9
40
45.6
Minor BPS
52.2
0.15
2
76.21
40.7

Associated Gene:

Gene:
FAM221A
Ensembl Gene ID:
ENSAPLG00000013898
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014479
33485822 - 33493490
7669