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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33497254_33497358_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33497254 - 33497358
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCGA
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TCTTCCTTACCA
Flanking Amino Acid:
VMDGDAECSKVEDVVGCHVE
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
62.5
43.6
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
74.6
0.55
1
72.7
32.5
Minor 5ss
30.2
-2.3
3.2
39.4
45.8
Minor BPS
76.3
0.82
1.6
83.03
38.2

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371