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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33498760_33499752_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33498760 - 33499752
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTAATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
AIFGKPDFSKIYGGCFSEDR
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
80.3
0.68
0.9
77
35.9
Minor 5ss
34.1
-1.8
2.9
42.6
44.2
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371