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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33499828_33500510_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33499828 - 33500510
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCTTATTTACAT
Flanking Amino Acid:
MVQQVINNEKCQVLYIDYGN
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
76.4
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.9
74.6
39.4
Minor 5ss
23.4
-3.1
4
39
46.4
Minor BPS
48.5
-0
1.9
66.63
43.9

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371