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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33500670_33502062_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33500670 - 33502062
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ACAACATCAACA
Flanking Amino Acid:
ADQNLNTFDQGKKFLGSLVF
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
70
0.5
1
67
39.8
Major PPT
84.9
0.79
0.8
79.1
32.6
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
48.1
-0.1
1.8
57.51
41.1

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371