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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33502419_33503913_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33502419 - 33503913
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
AATTTCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTCTTAATT
Flanking Amino Acid:
NAAGNRMVVTKEKMLASAPA
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
60.7
43.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.1
0.5
1.1
71.8
37.6
Minor 5ss
32.8
-2
3.3
40.3
39.5
Minor BPS
82.6
1.1
1
93.07
28.2

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371