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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33506040_33506851_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33506040 - 33506851
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTACTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
TCTTCCTTACTA
Flanking Amino Acid:
AANVKVLKEIRHAKKNAGFG
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
72.2
0.5
0.9
70.1
35.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
72.3
0.7
1.6
78.78
38.5

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371