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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33511779_33514361_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33511779 - 33514361
Intron Length:
2583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
CTTTGATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGCTTTGATG
Flanking Amino Acid:
FLSERSRMLQELSGSLEMVY
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
70.6
0.46
1
64.7
40.5
Minor 5ss
28.7
-2.4
3.4
37.1
47.5
Minor BPS
65.6
0.35
1.4
69.68
38.6

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371