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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33517977_33519298_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33517977 - 33519298
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
ATTCCTAACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTATTCCTAACG
Flanking Amino Acid:
KLAEKNNLEESDDCSELEMT
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
72.4
32
Major BPS
72
0.55
1
71.8
31.4
Major PPT
68.9
0.42
0.9
63.4
36.5
Minor 5ss
40.6
-1.1
2.8
48.8
41.6
Minor BPS
65.8
0.36
1.7
72.85
39.4

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371