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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33520422_33520718_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33520422 - 33520718
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCGA
5'SS Class:
major
3'SS Sequence:
ATGTGTGCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GCACTCTTATTC
Flanking Amino Acid:
YPEAGILSYMNSGGLLSHSL
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
61.6
44.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
70.7
0.47
1
66.4
44.6
Minor 5ss
37.4
-1.4
3
44.7
45
Minor BPS
48.8
-0.1
1.6
52.83
38.8

Associated Gene:

Gene:
STK31
Ensembl Gene ID:
ENSAPLG00000014105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014699
33496883 - 33531253
34371