Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33605868_33607132_F

Intron Information:

Intron Rank:

143858

Intron Class:

major

Intron Phase:

Intron Coordinates:

33605868 - 33607132

Intron Length:

1265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTGAGCAAA

5'SS Class:

major

3'SS Sequence:

TTCATGTGTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGTTCCAAAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.7

0.44

65.7

35.3

Major BPS

100

1.24

0.5

100

Major PPT

74.9

0.56

72.6

42.2

Minor 5ss

35.1

-1.7

2.9

41.1

40.5

Minor BPS

57.3

0.23

1.9

73.11

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040943

33592344 - 33620469

28126

ENSAPLT00000020357

33603573 - 33620469

16897