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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33607244_33618389_F

Intron Information:

Intron Rank:
143859
Intron Class:
major
Intron Phase:
Intron Coordinates:
33607244 - 33618389
Intron Length:
11146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGTTT
5'SS Class:
major
3'SS Sequence:
GATTCTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTTCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1
69.1
38
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.4
0.62
0.9
70.4
35.9
Minor 5ss
35.5
-1.6
3.7
55.1
49.1
Minor BPS
77
0.93
1.1
86.06
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027528
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040943
33592344 - 33620469
28126
ENSAPLT00000027148
33606919 - 33644862
37944
ENSAPLT00000020357
33603573 - 33620469
16897