About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33618516_33618930_F

Intron Information:

Intron Rank:
143866
Intron Class:
major
Intron Phase:
Intron Coordinates:
33618516 - 33618930
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCAAAGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CCTTCCTTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
67
0.38
1
64.7
35.4
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
72.8
0.79
1.6
83.67
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027528
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040943
33592344 - 33620469
28126