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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33653937_33656953_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33653937 - 33656953
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TAATATGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTATTCATAATA
Flanking Amino Acid:
RESTENIPRSRFEDPSMW*
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.6
0.51
1
65.2
44.8
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
60
0.31
1.6
68.54
38.1

Associated Gene:

Gene:
NPY
Ensembl Gene ID:
ENSAPLG00000014559
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015176
33648954 - 33656978
8025