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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3367013_3368369_R

Intron Information:

Intron Rank:
134429
Intron Class:
major
Intron Phase:
Intron Coordinates:
3367013 - 3368369
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
CCTTTATTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
87.1
0.83
0.7
84.7
28.8
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
50.3
0.01
1.9
63.34
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019594
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037613
3366809 - 3379267
12459