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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33670214_33673880_F

Intron Information:

Intron Rank:
126147
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
33670214 - 33673880
Intron Length:
3667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTTAA
5'SS Class:
weak_major
3'SS Sequence:
CTTCATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTATAGTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
66.2
35.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.7
0.67
0.9
76.5
37.3
Minor 5ss
48.5
-0.1
2.5
67
44.2
Minor BPS
59.3
0.29
1.8
76.11
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017964
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034216
33670110 - 33707129
37020