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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33673970_33675019_F

Intron Information:

Intron Rank:
126148
Intron Class:
major
Intron Phase:
Intron Coordinates:
33673970 - 33675019
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
CTCTCTGCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTACTAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
41.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
65.1
0.34
0.9
58.8
37
Minor 5ss
36.5
-1.5
3
48.4
42.4
Minor BPS
60.8
0.33
1.9
77.86
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017964
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034216
33670110 - 33707129
37020