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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3368453_3378858_R

Intron Information:

Intron Rank:
134430
Intron Class:
major
Intron Phase:
Intron Coordinates:
3368453 - 3378858
Intron Length:
10406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTATCTC
5'SS Class:
major
3'SS Sequence:
AATTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GATTTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.3
62.1
42.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.7
0.76
0.8
77.1
36.2
Minor 5ss
39.6
-1.2
2.9
53.3
43.8
Minor BPS
65.9
0.58
1.5
78.99
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019594
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037613
3366809 - 3379267
12459