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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33768478_33773036_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33768478 - 33773036
Intron Length:
4559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
TTTTATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
ENPIVRSLAKAHERLEDSKL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90
0.9
0.7
84.5
30.1
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
MPP6
Ensembl Gene ID:
ENSAPLG00000014575
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015231
33765527 - 33789725
24199
ENSAPLT00000030013
33767444 - 33789725
22282