About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33779089_33781072_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33779089 - 33781072
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
TATTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTACCCTTGATT
Flanking Amino Acid:
VNREDPNWWQASHVKEGGSA
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.6
0.87
0.7
81
36.2
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
75.7
0.89
1.1
85.66
34.1

Associated Gene:

Gene:
MPP6
Ensembl Gene ID:
ENSAPLG00000014575
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015231
33765527 - 33789725
24199
ENSAPLT00000030013
33767444 - 33789725
22282