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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33782770_33786484_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33782770 - 33786484
Intron Length:
3715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATATTT
Flanking Amino Acid:
NPTRFGTTVPFTSRKPRDDE
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.9
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.8
0.9
85.1
34.9
Minor 5ss
38.9
-1.2
3
53.8
43.7
Minor BPS
50.7
0.1
1.8
73.26
38.1

Associated Gene:

Gene:
MPP6
Ensembl Gene ID:
ENSAPLG00000014575
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015231
33765527 - 33789725
24199
ENSAPLT00000030013
33767444 - 33789725
22282