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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33802714_33802829_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33802714 - 33802829
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAGAAGT
Flanking Amino Acid:
EEMVTALEDVLDDICTGDKP
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
48.7
-0
2.2
79.51
41.8

Associated Gene:

Gene:
GSDME
Ensembl Gene ID:
ENSAPLG00000014944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015582
33799755 - 33832712
32958