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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33802958_33804948_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33802958 - 33804948
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACCA
5'SS Class:
major
3'SS Sequence:
TTTCTTGGAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACTTTTACTT
Flanking Amino Acid:
SDASLSVLKQDLSWLKAQFQ
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.8
38.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
60.6
0.24
1.2
63.9
40.8
Minor 5ss
38.4
-1.3
3
49.4
46.3
Minor BPS
56.7
0.29
1.6
73.31
38.2

Associated Gene:

Gene:
GSDME
Ensembl Gene ID:
ENSAPLG00000014944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015582
33799755 - 33832712
32958