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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33805138_33821478_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33805138 - 33821478
Intron Length:
16341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
ELFIKCNGQFEFCLLDEQQG
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84
0.76
0.8
77.8
34.2
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
GSDME
Ensembl Gene ID:
ENSAPLG00000014944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015582
33799755 - 33832712
32958