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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33821600_33822602_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33821600 - 33822602
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
AAATGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATCGAATAAACA
Flanking Amino Acid:
LLGCSTKTIKVSVSDSGSTV
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
61.3
0.25
1
51.7
42.8
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
43.8
-0.4
2.1
55.62
43.2

Associated Gene:

Gene:
GSDME
Ensembl Gene ID:
ENSAPLG00000014944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015582
33799755 - 33832712
32958